IL_2AAR_059

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCAAG*CUCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_059 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3973

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

2AAR|1|0|U|1490
2AAR|1|0|C|1491
2AAR|1|0|A|1492
2AAR|1|0|A|1493
2AAR|1|0|G|1494
*
2AAR|1|0|C|1529
2AAR|1|0|U|1530
2AAR|1|0|C|1531
2AAR|1|0|A|1532
2AAR|1|0|G|1533

Current chains

Chain 0

23S ribosomal RNA

Nearby chains