IL_2AAR_077

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2AAR|1|0|A|1921, 2AAR|1|0|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_077 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.3065

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2AAR|1|0|C|1917
2AAR|1|0|G|1918
2AAR|1|0|A|1919
2AAR|1|0|A|1920
2AAR|1|0|A|1921
2AAR|1|0|U|1922
2AAR|1|0|U|1923
2AAR|1|0|C|1924
2AAR|1|0|C|1925
2AAR|1|0|U|1926
2AAR|1|0|U|1927
2AAR|1|0|G|1928
*
2AAR|1|0|C|1944
2AAR|1|0|C|1945
2AAR|1|0|U|1946
2AAR|1|0|G|1947

Current chains

Chain 0

23S ribosomal RNA

Nearby chains