IL_2AAR_079

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

2AAR|1|0|C|2038, 2AAR|1|0|C|2591, 2AAR|1|0|U|2592, 2AAR|1|0|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_079 not in the Motif Atlas

Homologous match to IL_7A0S_074

Geometric discrepancy: 0.1408

The information below is about IL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

2AAR|1|0|A|2037
2AAR|1|0|C|2038
2AAR|1|0|G|2039
2AAR|1|0|A|2040
*
2AAR|1|0|U|2590
2AAR|1|0|C|2591
2AAR|1|0|U|2592
2AAR|1|0|A|2593
2AAR|1|0|U|2594

Current chains

Chain 0

23S ribosomal RNA

Nearby chains