IL_2AAR_102

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

2AAR|1|0|A|2521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_102 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1308

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

2AAR|1|0|U|2501
2AAR|1|0|G|2502
*
2AAR|1|0|C|2519
2AAR|1|0|A|2520
2AAR|1|0|A|2521
2AAR|1|0|G|2522

Current chains

Chain 0

23S ribosomal RNA

Nearby chains