IL_2AAR_112

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_112 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2425

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

2AAR|1|0|U|2822
2AAR|1|0|G|2823
2AAR|1|0|C|2824
2AAR|1|0|A|2825
2AAR|1|0|C|2826
2AAR|1|0|G|2827
*
2AAR|1|0|U|2840
2AAR|1|0|U|2841
2AAR|1|0|C|2842
2AAR|1|0|A|2843
2AAR|1|0|G|2844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains