IL_2AAR_113

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

2AAR|1|0|U|1037, 2AAR|1|0|A|1138, 2AAR|1|0|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_113 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.128

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|G|1035
2AAR|1|0|G|1036
2AAR|1|0|U|1037
2AAR|1|0|U|1038
2AAR|1|0|A|1039
2AAR|1|0|A|1040
2AAR|1|0|G|1041
*
2AAR|1|0|C|1135
2AAR|1|0|G|1136
2AAR|1|0|A|1137
2AAR|1|0|A|1138
2AAR|1|0|A|1139
2AAR|1|0|A|1140
2AAR|1|0|U|1141
2AAR|1|0|G|1142
2AAR|1|0|A|1143
2AAR|1|0|U|1144
2AAR|1|0|C|1145
2AAR|1|0|G|1146
2AAR|1|0|G|1147
2AAR|1|0|G|1148
2AAR|1|0|G|1149
2AAR|1|0|C|1150

Current chains

Chain 0

23S ribosomal RNA

Nearby chains