IL_2ANR_001

3D structure

PDB id

2ANR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure (II) of Nova-1 KH1/KH2 domain tandem with 25nt RNA hairpin

Experimental method

X-RAY DIFFRACTION

Resolution

1.94 Å

Loop

Sequence

C(5BU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ANR_001 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1297

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2ANR|1|B|C|201
2ANR|1|B|5BU|202
2ANR|1|B|C|203
*
2ANR|1|B|G|223
2ANR|1|B|A|224
2ANR|1|B|G|225

Current chains

Chain B

5'-R(*CP*(5BU)P*CP*GP*CP*GP*GP*AP*UP*CP*AP*GP*UP*CP*AP*CP*CP*CP*AP*AP*GP*CP*GP*AP*G)-3'

Nearby chains