IL_2AWQ_002

3D structure

PDB id

2AWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GA(PSU)U*AAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AWQ_002 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3728

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2AWQ|4|A|G|4
2AWQ|4|A|A|5
2AWQ|4|A|PSU|6
2AWQ|4|A|U|7
*
2AWQ|4|A|A|11
2AWQ|4|A|A|12
2AWQ|4|A|U|13
2AWQ|4|A|C|14

Current chains

Chain A

5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3'

Nearby chains