Motif IL_59580.1 Version IL_59580.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_337 | 8GLP | 0.4068 | 1 | S2 | SSU rRNA | C | 1395 | A | 1396 | G | 1398 | C | 1399 | * | OMG | 1447 | A | 1448 | G | 1449 | G | 1450 | cWW | cHW | cWW | cWW | |
| 2 | IL_7WIE_001 | 7WIE | 0.2794 | 0 | V | THF-II riboswitch (folE RNA) | U | 10 | G | 11 | G | 12 | U | 13 | * | G | 49 | A | 50 | G | 51 | A | 52 | cWW | cHW | cWW | cWW | |
| 3 | IL_1CSL_001 | 1CSL | 0.2397 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW | |
| 4 | IL_7R9F_001 | 7R9F | 0.0000 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | cWW | cWW | |||
| 5 | IL_6DTD_001 | 6DTD | 0.3489 | 0 | Tandem non-canonical cWW pairs | C | RNA (37-MER) | G | 5 | C | 6 | A | 7 | U | 8 | * | A | 31 | A | 32 | A | 33 | C | 34 | cWW | ncBW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGC*(OMG)AGG | 1 |
| UGGU*GAGA | 1 |
| GGUAC*GGGC | 1 |
| CGGG*CGGG | 1 |
| GCAU*AAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUG*AG | 1 |
| GG*AG | 1 |
| GUA*GG | 1 |
| GG*GG | 1 |
| CA*AA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-cHW-cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.31 | Max 0.71
Coloring options: