IL_2AZ2_002

3D structure

PDB id

2AZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Flock House virus B2-dsRNA Complex (P4122)

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAC*G(5BU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AZ2_002 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.0997

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2AZ2|1|C|G|6
2AZ2|1|C|A|7
2AZ2|1|C|C|8
*
2AZ2|1|D|G|11
2AZ2|1|D|5BU|12
2AZ2|1|D|C|13

Current chains

Chain C

5'-R(*GP*CP*AP*(5BU)P*GP*GP*AP*CP*GP*CP*GP*(5BU)P*CP*CP*AP*(5BU)P*GP*C)-3'

Chain D

5'-R(*GP*CP*AP*(5BU)P*GP*GP*AP*CP*GP*CP*GP*(5BU)P*CP*CP*AP*(5BU)P*GP*C)-3'

Nearby chains

Chain A

B2 protein

Chain B

B2 protein