IL_2AZ2_004
3D structure
- PDB id
- 2AZ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Flock House virus B2-dsRNA Complex (P4122)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CA(5BU)G*CA(5BU)G
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2AZ2_004 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.125
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
2AZ2|1|C|C|14
2AZ2|1|C|A|15
2AZ2|1|C|5BU|16
2AZ2|1|C|G|17
*
2AZ2|1|D|C|2
2AZ2|1|D|A|3
2AZ2|1|D|5BU|4
2AZ2|1|D|G|5
Current chains
- Chain C
- 5'-R(*GP*CP*AP*(5BU)P*GP*GP*AP*CP*GP*CP*GP*(5BU)P*CP*CP*AP*(5BU)P*GP*C)-3'
- Chain D
- 5'-R(*GP*CP*AP*(5BU)P*GP*GP*AP*CP*GP*CP*GP*(5BU)P*CP*CP*AP*(5BU)P*GP*C)-3'
Nearby chains
- Chain A
- B2 protein
- Chain B
- B2 protein
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