IL_2D1A_001

3D structure

PDB id

2D1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGC*GAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D1A_001 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3772

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

2D1A|1|A|G|6
2D1A|1|A|G|7
2D1A|1|A|C|8
*
2D1A|1|B|G|30
2D1A|1|B|A|31
2D1A|1|B|G|32
2D1A|1|B|G|33
2D1A|1|B|C|34

Current chains

Chain A

RNA

Chain B

RNA

Nearby chains