IL_2D3O_009

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCCUC*GAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_009 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.3912

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

2D3O|1|0|C|299
2D3O|1|0|C|300
2D3O|1|0|C|301
2D3O|1|0|U|302
2D3O|1|0|C|303
*
2D3O|1|0|G|359
2D3O|1|0|A|360
2D3O|1|0|G|361
2D3O|1|0|C|362
2D3O|1|0|G|363

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains