IL_2D3O_017

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_017 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1241

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|U|716
2D3O|1|0|G|717
2D3O|1|0|A|718
2D3O|1|0|A|719
2D3O|1|0|A|720
2D3O|1|0|C|721
*
2D3O|1|0|G|736
2D3O|1|0|C|737
2D3O|1|0|G|738
2D3O|1|0|G|739
2D3O|1|0|A|740
2D3O|1|0|G|741

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains