IL_2D3O_028

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

2D3O|1|0|A|922, 2D3O|1|0|A|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_028 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.3375

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|G|877
2D3O|1|0|C|878
2D3O|1|0|A|879
2D3O|1|0|C|880
2D3O|1|0|U|881
*
2D3O|1|0|A|921
2D3O|1|0|A|922
2D3O|1|0|A|923
2D3O|1|0|C|924

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains