IL_2D3O_031

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUCA*UAU

Length

7 nucleotides

Bulged bases

2D3O|1|0|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_031 not in the Motif Atlas

Geometric match to IL_5J7L_286

Geometric discrepancy: 0.3228

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

2D3O|1|0|A|1004
2D3O|1|0|U|1005
2D3O|1|0|C|1006
2D3O|1|0|A|1007
*
2D3O|1|0|U|1170
2D3O|1|0|A|1171
2D3O|1|0|U|1172

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains