Motif IL_42997.3 Version IL_42997.3 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_030 | 7A0S | 0.3474 | 0 | Isolated near basepair | X | LSU rRNA | U | 917 | A | 918 | U | 919 | * | A | 883 | C | 884 | A | 885 | cWW | cWW | |
| 2 | IL_2ZI0_001 | 2ZI0 | 0.3799 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
| 3 | IL_8P9A_395 | 8P9A | 0.2445 | 0 | Isolated near basepair (H) | sR | SSU rRNA | A | 420 | A | 421 | G | 422 | * | C | 411 | A | 412 | U | 413 | cWW | ncWw | cWW |
| 4 | IL_7VFT_002 | 7VFT | 0.0000 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 8||||12_555 | A | 9||||12_555 | G | 10||||12_555 | * | C | 14 | A | 15 | G | 16 | cWW | cWW | |
| 5 | IL_4V9F_077 | 4V9F | 0.1577 | 0 | Isolated near basepair | 0 | LSU rRNA | G | 2237 | A | 2238 | C | 2239 | * | G | 2136 | A | 2137 | C | 2138 | cWW | ncWW | |
| 6 | IL_8CRE_412 | 8CRE | 0.1645 | 0 | Isolated non-canonical cWW pair (H) | CM | SSU rRNA | A | 418 | A | 419 | G | 420 | * | C | 409 | A | 410 | U | 411 | cWW | cWW | |
| 7 | IL_3NJ7_004 | 3NJ7 | 0.1766 | 0 | Isolated near basepair | D+C | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 8 | IL_3NJ7_003 | 3NJ7 | 0.1787 | 0 | Isolated near basepair | C+D | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 9 | IL_7VFT_001 | 7VFT | 0.3133 | 0 | Isolated non-canonical cWW contact | A | RNA (23-mer) | C | 17 | A | 18 | G | 19 | * | C | 5||||12_555 | A | 6||||12_555 | G | 7||||12_555 | cWW | cWW | |
| 10 | IL_9DFE_029 | 9DFE | 0.2577 | 0 | 1A | LSU rRNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | cWS | cWW | |
| 11 | IL_8P9A_285 | 8P9A | 0.4206 | 1 | AR | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW | |
| 12 | IL_8CRE_061 | 8CRE | 0.4201 | 1 | 1 | LSU rRNA | C | 1372 | G | 1373 | U | 1374 | * | A | 1424 | U | 1426 | G | 1427 | cWW | cWS | cWW | |
| 13 | IL_4V9F_046 | 4V9F | 0.4141 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 14 | IL_7A0S_041 | 7A0S | 0.4141 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 15 | IL_4WF9_044 | 4WF9 | 0.4214 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1235 | G | 1236 | U | 1237 | * | A | 1285 | U | 1287 | G | 1288 | cWW | cWS | cWW |
| 16 | IL_9DFE_044 | 9DFE | 0.4529 | 1 | 1A | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 17 | IL_5J7L_286 | 5J7L | 0.4085 | 1 | Isolated cWS basepair | DA | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 18 | IL_5E81_401 | 5E81 | 0.4721 | 0 | 3L | tRNA | C | 67 | G | 68 | A | 69 | * | U | 4 | C | 5 | G | 6 | cWW | cWS | cWW | |
| 19 | IL_7QR8_004 | 7QR8 | 0.5312 | 0 | C+A | PTPRC off-target1 target strand | DG | 11 | DT | 12 | DG | 13 | * | C | 7 | U | 8 | C | 9 | cWW | cWW | ||
| 20 | IL_4PCJ_002 | 4PCJ | 0.5595 | 0 | Isolated non-canonical cWW pair | A | trCUG-3('5) | C | 30 | U | 31 | G | 32 | * | C | 4 | PSU | 5 | G | 6 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 6 |
| CAG*CAG | 4 |
| AAG*CAU | 2 |
| UAU*ACA | 1 |
| UUA*UUA | 1 |
| GAC*GAC | 1 |
| UGU*AUA | 1 |
| CGC*GACG | 1 |
| CGA*UCG | 1 |
| GTG*CUC | 1 |
| CUG*C(PSU)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 7 |
| G*GU | 6 |
| A*C | 1 |
| U*U | 1 |
| G*U | 1 |
| G*AC | 1 |
| G*C | 1 |
| T*U | 1 |
| U*(PSU) | 1 |
- Annotations
-
- (6)
- Isolated near basepair (5)
- Isolated cWS basepair (4)
- Isolated non-canonical cWW pair (2)
- Isolated non-canonical cWW contact (1)
- Isolated non-canonical cWW pair (H) (1)
- Isolated near basepair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.01 | Avg 0.39 | Max 0.74
Coloring options: