IL_2D3O_032

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

2D3O|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_032 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1369

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

2D3O|1|0|C|1009
2D3O|1|0|U|1010
2D3O|1|0|A|1011
2D3O|1|0|A|1012
2D3O|1|0|G|1013
*
2D3O|1|0|C|1164
2D3O|1|0|G|1165
2D3O|1|0|A|1166
2D3O|1|0|A|1167
2D3O|1|0|G|1168

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains