IL_2D3O_033

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

2D3O|1|0|A|1020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_033 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.166

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

2D3O|1|0|U|1015
2D3O|1|0|C|1016
2D3O|1|0|C|1017
2D3O|1|0|C|1018
2D3O|1|0|U|1019
2D3O|1|0|A|1020
2D3O|1|0|A|1021
2D3O|1|0|A|1022
*
2D3O|1|0|U|1161
2D3O|1|0|A|1162

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains