IL_2D3O_045

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

2D3O|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_045 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.3372

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

2D3O|1|0|C|1210
2D3O|1|0|G|1211
2D3O|1|0|U|1212
*
2D3O|1|0|A|1260
2D3O|1|0|G|1261
2D3O|1|0|U|1262
2D3O|1|0|G|1263

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains