IL_2D3O_052

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_052 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.2537

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2D3O|1|0|A|1275
2D3O|1|0|U|1276
2D3O|1|0|G|1277
2D3O|1|0|A|1278
2D3O|1|0|G|1279
2D3O|1|0|U|1280
2D3O|1|0|A|1281
2D3O|1|0|A|1282
*
2D3O|1|0|U|1994
2D3O|1|0|G|1995
2D3O|1|0|A|1996
2D3O|1|0|A|1997
2D3O|1|0|A|1998
2D3O|1|0|U|1999
2D3O|1|0|U|2000

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains