IL_2D3O_056

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_056 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.1428

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

2D3O|1|0|U|1370
2D3O|1|0|G|1371
2D3O|1|0|A|1372
2D3O|1|0|G|1373
2D3O|1|0|G|1374
*
2D3O|1|0|C|1383
2D3O|1|0|G|1384
2D3O|1|0|C|1385
2D3O|1|0|A|1386
2D3O|1|0|G|1387

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains