IL_2D3O_066

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUCAG*CUAC

Length

10 nucleotides

Bulged bases

2D3O|1|0|C|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_066 not in the Motif Atlas

Homologous match to IL_7A0S_058

Geometric discrepancy: 0.426

The information below is about IL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05553.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

2D3O|1|0|G|1503
2D3O|1|0|G|1504
2D3O|1|0|U|1505
2D3O|1|0|C|1506
2D3O|1|0|A|1507
2D3O|1|0|G|1508
*
2D3O|1|0|C|1514
2D3O|1|0|U|1515
2D3O|1|0|A|1516
2D3O|1|0|C|1517

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains