Motif IL_05553.1 Version IL_05553.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-4 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MFQ_001 | 1MFQ | 0.5316 | 0 | A | SRP RNA | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | cWW | ||||
| 2 | IL_7A0S_058 | 7A0S | 0.0000 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | * | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | |
| 3 | IL_8P9A_455 | 8P9A | 0.6966 | 0 | Non canonical cWW and near pair (H) | sR | SSU rRNA | A | 1753 | A | 1754 | A | 1755 | A | 1756 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | ntWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUA*UAAG | 1 |
| GGUCAG*CUAC | 1 |
| AAAAG*CGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*AA | 1 |
| GUCA*UA | 1 |
| AAA*GC | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Non canonical cWW and near pair (H) (1)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.53 | Avg 0.45 | Max 0.79
Coloring options: