IL_2D3O_067

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_067 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.1368

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|G|1668
2D3O|1|0|A|1669
2D3O|1|0|G|1670
2D3O|1|0|A|1671
2D3O|1|0|A|1672
2D3O|1|0|C|1673
*
2D3O|1|0|G|1987
2D3O|1|0|A|1988
2D3O|1|0|C|1989

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains