IL_2D3O_070

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

2D3O|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_070 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.1517

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

2D3O|1|0|A|1686
2D3O|1|0|C|1687
2D3O|1|0|U|1688
2D3O|1|0|U|1689
2D3O|1|0|U|1690
2D3O|1|0|G|1691
*
2D3O|1|0|C|1973
2D3O|1|0|U|1974
2D3O|1|0|G|1975
2D3O|1|0|U|1976

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains