IL_2D3O_078

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_078 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.366

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

2D3O|1|0|U|1848
2D3O|1|0|G|1849
2D3O|1|0|G|1850
2D3O|1|0|A|1851
2D3O|1|0|G|1852
*
2D3O|1|0|C|1865
2D3O|1|0|G|1866
2D3O|1|0|A|1867
2D3O|1|0|A|1868
2D3O|1|0|A|1869

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains