IL_2D3O_089

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGGG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_089 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.3715

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

2D3O|1|0|C|2082
2D3O|1|0|G|2083
2D3O|1|0|G|2084
2D3O|1|0|G|2085
*
2D3O|1|0|C|2170
2D3O|1|0|U|2171
2D3O|1|0|U|2172
2D3O|1|0|G|2173

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains