RNA 3D Hub //

Motif IL_67085.2 Version IL_67085.2 of this group appears in releases 3.90 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-63-74-5
1 IL_6DTD_0016DTD0.46450Tandem non-canonical cWW pairsCRNA (37-MER)A31A32A33C34*G5C6A7U8cWWcWwncWBcWW
2 IL_1L9A_0051L9A0.22300Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG138A139C140C141*G156A157C158C159cWWncWWncWWacWW
3 IL_4K27_0014K270.23570Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWWcWW
4 IL_4V88_4324V880.42040Tandem non-canonical cWW pairsA6 SSU rRNAA924G925A926C927*G885U886A887U888cWWcWWcWW
5 IL_8C3A_4398C3A0.43090Tandem non-canonical cWW pairsCM SSU rRNAA909G910A911C912*G870U871A872U873cWWcWWcWW
6 IL_8C3A_4378C3A0.30720Tandem non-canonical cWW pairsCM SSU rRNAG938G939A940C941*G856G857U858C859cWWcWWcWW
7 IL_4V88_4304V880.29410Tandem non-canonical cWW pairsA6 SSU rRNAG953G954A955C956*G871G872U873C874cWWcWWcWW
8 IL_3CJZ_0013CJZ0.38840Tandem non-canonical cWW pairsA+BRNA (13-mer)G5M2G6A7C8*G18M2G19A20C21cWWcWWcWWcWW
9 IL_5LQO_0025LQO0.37000Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
10 IL_5LQT_0025LQT0.31890Tandem non-canonical cWW pairsB+ARNA (10-mer)G4G56MZ6C7*G4G56MZ6C7cWWcWWcWWcWW
11 IL_333D_001333D0.32500Tandem non-canonical cWW pairsARNA (8-mer)C3A4I5G6*C3||||11_655A4||||11_655I5||||11_655G6||||11_655cWWcWWcWWcWW
12 IL_4V88_4384V880.39630Tandem non-canonical cWW pairsA6 SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
13 IL_8C3A_4448C3A0.38120Tandem non-canonical cWW pairsCM SSU rRNAG1059C1060A1061C1062*G1026G1027A1028U1029cWWncWWacWWcWW
14 IL_5J7L_2835J7L0.36010Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
15 IL_8C3A_1098C3A0.38200Tandem non-canonical cWW pairs1 LSU rRNAU2707A2708C2709A2710*U2690U2691G2692A2693cWWcWWcWW
16 IL_5TBW_1005TBW0.40390Tandem non-canonical cWW pairs1 LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
17 IL_7R9G_0027R9G0.32940Tandem non-canonical cWW pairsBRNA (18-mer)C5G6G7G8*C5||||2_555G6||||2_555G7||||2_555G8||||2_555ncWWncWW
18 IL_8C3A_4388C3A0.45291Tandem non-canonical cWW pairsCM SSU rRNAC859G860G862G863*C935A936A937G938cWWcWWcWWcWW
19 IL_4V88_4314V880.47451Tandem non-canonical cWW pairsA6 SSU rRNAC874G875G877G878*C950A951A952G953cWWcWWcWWcWW
20 IL_6JDV_0026JDV0.30200Tandem non-canonical cWW pairsBsgRNAA63C64C65G66*C35C36U37U38cWWcWWcWW
21 IL_4EYA_0104EYA0.36440Tandem non-canonical cWW pairsn+mRNA (12-mer)C6U7U8G9*C6U7U8G9ncWWncWwncWwcWW
22 IL_1D4R_0031D4R0.18870Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
23 IL_1JID_0021JID0.16450Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
24 IL_1MFQ_0041MFQ0.20900Tandem non-canonical cWW pairsA SRP RNAG156A157C158C159*G138A139C140C141cWWncWWncWWcWW
25 IL_3WBM_0023WBM0.18620Tandem non-canonical cWW pairsY+XRNA (25-MER)G14A15C16U17*A10C11C12C13cWWncWWncBWcWW
26 IL_3WBM_0033WBM0.17530Tandem non-canonical cWW pairsX+YRNA (25-MER)G14A15C16U17*A10C11C12C13cWWcWWncBWcWW
27 IL_1D4R_0011D4R0.00000Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWacWW
28 IL_8C3A_0188C3A0.32820Tandem non-canonical cWW pairs1 LSU rRNAA445U446U447U448*G481U482U483U484cWWncWScWW
29 IL_8X5V_0018X5V0.40690Tandem non-canonical cWW pairsBRNA (110-mer)U28U29C30C31*G40U41U42G43cWWcwWcWWcWW
30 IL_4K27_0024K270.41620Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
31 IL_4K27_0034K270.41240Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
32 IL_4XW0_0024XW00.34650Tandem non-canonical cWW pairsA+BRNA (10-mer)C2C3U4LCG5*C2C3U4LCG5cWWcWWcWWcWW
33 IL_4XW1_0024XW10.34620Tandem non-canonical cWW pairsCRNA (9-mer)C2||||7_555C3||||7_555U4||||7_555LCG5||||7_555*C2C3U4LCG5cWWcWWcWWcWW
34 IL_8C3A_1358C3A0.31290Tandem non-canonical cWW pairs1 LSU rRNAC3276U3277U3278A3279*U3265U3266U3267G3268cWWcWwcWwcWW
35 IL_2PN3_0042PN30.40090Tandem non-canonical cWW pairsA+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
36 IL_3TZR_0033TZR0.34810Tandem non-canonical cWW pairsA+BRNA (20-mer) + RNA (16-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
37 IL_7A0S_0407A0S0.31290Tandem non-canonical cWW pairsX LSU rRNAA1175U1176U1177C1178*G1196U1197C1198U1199cWWcWWncWwcWW
38 IL_205D_001205D0.44290Tandem non-canonical cWW pairsA+BRNA (12-mer)U5U6U7G8*U17U18U19G20cWWcwWcWwcWW
39 IL_8HNT_0018HNT0.47720Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G54U55U56G57cWWcwWncWScWW
40 IL_6JDV_0016JDV0.48460Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G66U67U68G69cWWcwWncWScWW
41 IL_280D_001280D0.44630Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
42 IL_8C3A_1348C3A0.47680Tandem non-canonical cWW pairs1 LSU rRNAC3200U3201U3202A3203*U3214U3215U3216G3217cWWcwWcWwcWW
43 IL_8C3A_4798C3A0.36280Tandem non-canonical cWW pairsCM SSU rRNAG1710C1711U1712G1713*C1662U1663C1664C1665cWWncWwcWwcWW
44 IL_5TBW_1285TBW0.39360Tandem non-canonical cWW pairs1 LSU rRNAC3235U3236U3237G3238*C3249U3250U3251G3252cWWcwWcWwcWW
45 IL_6MWN_0056MWN0.41980Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
46 IL_3R2D_0023R2D0.40520Tandem non-canonical cWW pairsS+RRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
47 IL_8ID2_0018ID20.35360Tandem non-canonical cWW pairsCRNA (24-mer)A5C6U7G8*C17U18U19U20cWWncWWcWWcWwcWW
48 IL_4UYK_0034UYK0.41000Tandem non-canonical cWW pairsRSRP RNAG81U82U83C84*G117U118U119C120cWWcwWcWwcWW
49 IL_8C3A_0608C3A0.40910Tandem non-canonical cWW pairs1 LSU rRNAA1339U1340U1341G1342*C1354U1355U1356U1357cWWcwWcWwcWW
50 IL_4EYA_0034EYA0.43260Tandem non-canonical cWW pairsf+eRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
51 IL_4V88_5194V880.48890Tandem non-canonical cWW pairsA6 SSU rRNAC709U710U711G712*C726U727U728G729ncWWcwWcWwcWW
52 IL_5TBW_1295TBW0.41060Tandem non-canonical cWW pairs1 LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
53 IL_4V88_3914V880.46500Tandem non-canonical cWW pairsA6 SSU rRNAU302U303U304C305*G109U110U111A112cWWcwWcWwcWW
54 IL_8C3A_3998C3A0.46430Tandem non-canonical cWW pairsCM SSU rRNAU300U301U302C303*G109U110U111A112cWWcwWcWwcWW
55 IL_7LYF_0017LYF0.40901Isolated cWH basepair with non-canonical cWWA tRNAA90G91U93C94*G39U40C41U42cWWncHWncWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG6
GACC*GACC5
CCUG*CCUG3
AGAC*GUAU2
GGAC*GGUC2
GCAC*GGAU2
UACA*UUGA2
CGGGG*CAAG2
GACU*ACCC2
CCU(LCG)*CCU(LCG)2
CUUA*UUUG2
CUUC*GUCG2
CUCC*GUUG2
AUUG*CUUU2
UUUC*GUUA2
AAAC*GCAU1
GAC*GAC1
GGAC*GGAC1
GG(6MZ)C*GG(6MZ)C1
CA(I)G*CA(I)G1
GAAG*CGGC1
CGGG*CGGG1
ACCG*CCUU1
AUUU*GUUU1
UUCC*GUUG1
AUUC*GUCU1
UUUG*UUUG1
GCUG*CUCC1
ACUG*CUUU1
GUUC*GUUC1
UUUG*CUUA1
AGUUC*GUCU1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU16
AC*AC5
CU*CU5
UC*UU3
UU*UC3
GA*UA2
GA*GU2
CA*GA2
AC*UG2
GGG*AA2
AC*CC2
AA*CA1
(M2G)A*(M2G)A1
GA*GA1
G(6MZ)*G(6MZ)1
A(I)*A(I)1
AA*GG1
GG*GG1
CC*CU1
CU*UC1
CU*UU1
GUU*UC1

Release history

Release3.90
Date2024-11-06
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (54)
  • Isolated cWH basepair with non-canonical cWW (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.45 | Max 0.85
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 2.6429 s