IL_2D3O_097

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

2D3O|1|0|U|2298, 2D3O|1|0|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_097 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1987

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2D3O|1|0|C|2276
2D3O|1|0|A|2277
2D3O|1|0|A|2278
*
2D3O|1|0|U|2296
2D3O|1|0|G|2297
2D3O|1|0|U|2298
2D3O|1|0|A|2299
2D3O|1|0|G|2300

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains