IL_2D3O_099

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

2D3O|1|0|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_099 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2455

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

2D3O|1|0|G|2379
2D3O|1|0|U|2380
2D3O|1|0|A|2381
2D3O|1|0|C|2382
*
2D3O|1|0|G|2393
2D3O|1|0|G|2394
2D3O|1|0|C|2395

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains