IL_2D3O_104

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_104 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.2022

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

2D3O|1|0|C|2445
2D3O|1|0|C|2446
2D3O|1|0|G|2447
2D3O|1|0|A|2448
2D3O|1|0|G|2449
*
2D3O|1|0|C|2459
2D3O|1|0|G|2460
2D3O|1|0|G|2461
2D3O|1|0|C|2462
2D3O|1|0|G|2463

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains