IL_2D3O_110

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

2D3O|1|0|G|2757, 2D3O|1|0|U|2759, 2D3O|1|0|G|2760, 2D3O|1|0|A|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_110 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.2446

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|U|2615
2D3O|1|0|U|2616
2D3O|1|0|G|2617
2D3O|1|0|A|2618
2D3O|1|0|G|2619
*
2D3O|1|0|C|2754
2D3O|1|0|A|2755
2D3O|1|0|A|2756
2D3O|1|0|G|2757
2D3O|1|0|A|2758
2D3O|1|0|U|2759
2D3O|1|0|G|2760
2D3O|1|0|A|2761
2D3O|1|0|G|2762

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains