IL_2D3O_132

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUCAAG*UGAAGCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_132 not in the Motif Atlas

Geometric match to IL_5TBW_088

Geometric discrepancy: 0.379

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

2D3O|1|0|G|1841
2D3O|1|0|G|1842
2D3O|1|0|U|1843
2D3O|1|0|C|1844
2D3O|1|0|A|1845
2D3O|1|0|A|1846
2D3O|1|0|G|1847
*
2D3O|1|0|U|1870
2D3O|1|0|G|1871
2D3O|1|0|A|1872
2D3O|1|0|A|1873
2D3O|1|0|G|1874
2D3O|1|0|C|1875
2D3O|1|0|C|1876

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains