IL_2D3O_139

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_139 not in the Motif Atlas

Homologous match to IL_7A0S_111

Geometric discrepancy: 0.5607

The information below is about IL_7A0S_111

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|U|871
2D3O|1|0|G|872
2D3O|1|0|U|873
2D3O|1|0|A|874
2D3O|1|0|G|875
*
2D3O|1|0|C|927
2D3O|1|0|G|928
2D3O|1|0|A|929
2D3O|1|0|A|930
2D3O|1|0|G|931

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains