IL_2E5L_037

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

2E5L|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2E5L_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1369

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

2E5L|1|A|G|933
2E5L|1|A|C|934
2E5L|1|A|A|935
*
2E5L|1|A|U|1380
2E5L|1|A|U|1381
2E5L|1|A|C|1382
2E5L|1|A|C|1383
2E5L|1|A|C|1384

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9