IL_2ES5_020

3D structure

PDB id

2ES5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SRE RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

2ES5|20|A|C|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ES5_020 not in the Motif Atlas

Geometric match to IL_5J7L_311

Geometric discrepancy: 0.3532

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

2ES5|20|A|U|9
2ES5|20|A|C|10
*
2ES5|20|A|G|13
2ES5|20|A|C|14
2ES5|20|A|A|15

Current chains

Chain A

5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*UP*CP*C)-3'

Nearby chains