IL_2F4V_067

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGC*GCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGC,GCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4V_067 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.293

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

2F4V|1|A|G|1421
2F4V|1|A|G|1422
2F4V|1|A|G|1423
2F4V|1|A|C|1424
*
2F4V|1|A|G|1476
2F4V|1|A|C|1477
2F4V|1|A|C|1478
2F4V|1|A|C|1479

Current chains

Chain A

16S ribosomal RNA

Nearby chains