IL_2FCZ_002

3D structure

PDB id

2FCZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 DIS kissing-loop in complex with ribostamycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.01 Å

Loop

Sequence

U(5BU)G*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2FCZ_002 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1312

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2FCZ|1|B|U|2
2FCZ|1|B|5BU|3
2FCZ|1|B|G|4
*
2FCZ|1|B|C|20
2FCZ|1|B|A|21
2FCZ|1|B|A|22

Current chains

Chain B

HIV-1 DIS RNA

Nearby chains