IL_2FEY_039

3D structure

PDB id

2FEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of stem loop IV of Tetrahymena telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUG*CAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2FEY_039 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3139

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

2FEY|10|A|U|14
2FEY|10|A|U|15
2FEY|10|A|U|16
2FEY|10|A|G|17
*
2FEY|10|A|C|31
2FEY|10|A|A|32
2FEY|10|A|A|33

Current chains

Chain A

stem-loop IV of Tetrahymena telomerase RNA

Nearby chains