IL_2GIS_002

3D structure

PDB id

2GIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the S-adenosylmethionine riboswitch mRNA regulatory element

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAG*CGAUGAAA

Length

13 nucleotides

Bulged bases

2GIS|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89586.1

Basepair signature

Not available

Number of instances in this motif group

3

Unit IDs

2GIS|1|A|U|17
2GIS|1|A|G|18
2GIS|1|A|G|19
2GIS|1|A|A|20
2GIS|1|A|G|21
*
2GIS|1|A|C|31
2GIS|1|A|G|32
2GIS|1|A|A|33
2GIS|1|A|U|34
2GIS|1|A|G|35
2GIS|1|A|A|36
2GIS|1|A|A|37
2GIS|1|A|A|38

Current chains

Chain A

SAM-I riboswitch

Nearby chains