Motif IL_89586.1 Version IL_89586.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-6 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1T0K_001 | 1T0K | 0.0000 | 1 | Kink-turn | C+D | C | 9 | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 54 | A | 55 | G | 56 | G | 58 | A | 59 | U | 60 | G | 61 | cWW | ntSH | tSs | ntHS | cWW | |
| 2 | IL_2GIS_002 | 2GIS | 0.3562 | 1 | A | U | 17 | G | 18 | G | 19 | A | 20 | G | 21 | * | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | A | 38 | cWW | tSH | tSH | ntSs | tHS | cWW | |
| 3 | IL_1S72_048 | 1S72 | 0.4050 | 1 | Kink-turn (H) | 0 | U | 1338 | G | 1339 | G | 1340 | A | 1341 | C | 1342 | * | G | 1312 | A | 1313 | U | 1314 | G | 1316 | A | 1317 | A | 1318 | G | 1319 | cWW | tSH | tSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAG*CAGAGAUG | 1 |
| UGGAG*CGAUGAAA | 1 |
| UGGAC*GAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*AGAGAU | 1 |
| GGA*GAUGAA | 1 |
| GGA*AUGGAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89586.1 | Only in the parent motif |
|---|---|---|---|
| IL_36534.1 Compare | IL_2GIS_002, IL_1S72_048 | IL_1T0K_001 | IL_1S72_032, IL_3F1H_084, IL_2ZJR_043, IL_3F1H_004, IL_2ZJR_004, IL_1S72_004, IL_3F1H_045 |
Children motifs
| Child motif | Common motif instances | Only in IL_89586.1 | Only in the child motif |
|---|---|---|---|
| IL_65553.1 Compare | IL_1T0K_001, IL_1S72_048 | IL_2GIS_002 | IL_1S72_032, IL_3U5H_064, IL_3UXR_004, IL_2QBG_047, IL_2ZJR_043, IL_3U5F_019, IL_2ZJR_004, IL_3UXR_044, IL_1S72_004, IL_4A1B_062, IL_3GX5_002, IL_2AW7_014, IL_3NPB_003, IL_3RW6_006, IL_2XZM_017, IL_3RW6_002, IL_3U5F_051 |
- Annotations
-
- Kink-turn (H) (1)
- Kink-turn (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.33 | Avg 0.24 | Max 0.41
Coloring options: