IL_2HHH_020
3D structure
- PDB id
- 2HHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of kasugamycin bound to the 30S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2HHH_020 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1004
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
2HHH|1|A|C|488
2HHH|1|A|G|489
2HHH|1|A|G|490
2HHH|1|A|C|491
2HHH|1|A|C|492
2HHH|1|A|A|493
2HHH|1|A|A|494
2HHH|1|A|C|495
*
2HHH|1|A|G|524
2HHH|1|A|G|525
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
Coloring options: