IL_2HHH_053

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

2HHH|1|A|C|1383, 2HHH|1|A|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_053 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2335

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

2HHH|1|A|C|1382
2HHH|1|A|C|1383
2HHH|1|A|G|1384
*
2HHH|1|A|C|1479
2HHH|1|A|A|1480
2HHH|1|A|A|1481
2HHH|1|A|G|1482

Current chains

Chain A

16S ribosomal RNA

Nearby chains