IL_2HHH_054

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_054 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.129

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2HHH|1|A|G|1384
2HHH|1|A|C|1385
2HHH|1|A|C|1386
2HHH|1|A|C|1387
*
2HHH|1|A|G|1475
2HHH|1|A|U|1476
2HHH|1|A|A|1477
2HHH|1|A|A|1478
2HHH|1|A|C|1479

Current chains

Chain A

16S ribosomal RNA

Nearby chains