IL_2HHH_061

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

2HHH|1|A|G|1426, 2HHH|1|A|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_061 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.2656

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

2HHH|1|A|C|1423
2HHH|1|A|G|1424
2HHH|1|A|G|1425
2HHH|1|A|G|1426
2HHH|1|A|A|1427
2HHH|1|A|G|1428
*
2HHH|1|A|C|1437
2HHH|1|A|A|1438
2HHH|1|A|G|1439

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20