IL_2HHH_062

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGACC*GGG

Length

8 nucleotides

Bulged bases

2HHH|1|A|G|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_062 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.495

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

2HHH|1|A|U|123
2HHH|1|A|G|124
2HHH|1|A|A|125
2HHH|1|A|C|126
2HHH|1|A|C|127
*
2HHH|1|A|G|226
2HHH|1|A|G|227
2HHH|1|A|G|228

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20