IL_2HOJ_001

3D structure

PDB id

2HOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGU*AAC*C

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HOJ_001 not in the Motif Atlas

Geometric match to IL_7TZS_001

Geometric discrepancy: 0.1118

The information below is about IL_7TZS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2HOJ|1|A|G|18
2HOJ|1|A|G|19
2HOJ|1|A|U|20
*
2HOJ|1|A|A|45
2HOJ|1|A|A|47
2HOJ|1|A|C|48
*
2HOJ|1|A|C|48

Current chains

Chain A

thi-box riboswitch

Nearby chains