IL_2HOJ_003

3D structure

PDB id

2HOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGAUC*GCGA*A

Length

10 nucleotides

Bulged bases

2HOJ|1|A|U|62

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HOJ_003 not in the Motif Atlas

Geometric match to IL_3D2V_003

Geometric discrepancy: 0.097

The information below is about IL_3D2V_003

Detailed Annotation

cWH basepair and non-canonical AC

Broad Annotation

No text annotation

Motif group

IL_38634.5

Basepair signature

cWW-cWH-L-R-cWW

Number of instances in this motif group

2

Unit IDs

2HOJ|1|A|U|59
2HOJ|1|A|G|60
2HOJ|1|A|A|61
2HOJ|1|A|U|62
2HOJ|1|A|C|63
*
2HOJ|1|A|G|76
2HOJ|1|A|C|77
2HOJ|1|A|G|78
2HOJ|1|A|A|80
*
2HOJ|1|A|A|80

Current chains

Chain A

thi-box riboswitch

Nearby chains