Motif IL_38634.5 Version IL_38634.5 of this group appears in releases 3.62 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3K0J_003 | 3K0J | 0.0000 | 2 | cWH basepair and non-canonical AC | E | RNA (87-MER) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW |
2 | IL_3D2V_003 | 3D2V | 0.1501 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAUC*GCGUA | 1 |
UGAAC*GCGCA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAU*CGU | 1 |
GAA*CGC | 1 |
Release history
Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
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Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- cWH basepair and non-canonical AC (2)
- Basepair signature
- cWW-cWH-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.08 | Max 0.15
Coloring options: